Failure Case Library

Real lab failures, root causes, and fixes — curated and bilingually annotated by our team.

All Techniques (7) Nucleic Acid Quantification (9) Lipid Transfection (8) End-point PCR Primers (9) Cell Culture (Contamination) (7) PCR (Sigma Guide) (12) Flow Cytometry (Controls) (8) PCR / qPCR Plastics (9) PCR (Invitrogen Guide) (8) Cell Culture (Precipitates) (6) Cell Culture (Cell Death) (8) ELISA (Sigma Guide) (6) PCR / RT-PCR Amplification Problems (5) Flow Cytometry (Paraformaldehyde Fixation) (14) Flow Cytometry (Sample Considerations) (14) ELISA (R&D Guide) (10) Western Blot Immunodetection (19) Flow Cytometry (CST Guide) (8) Immunohistochemistry (CST Guide) (14) Immunoprecipitation (CST Guide) (14) ChIP (CST Guide) (8) ELISA Development (9) Western Blot (Sigma Protocol) (8) IP-Western Blot (6) Western Blot (CST Guide) (8) Flow Cytometry (Fixation Buffers) (7) Flow Cytometry (Isotype Controls) (7) Flow Cytometry (Fixation & Permeabilization) (9) Flow Cytometry (Fc Blocking) (7) Flow Cytometry (Compensation) (7) Flow Cytometry (Autofluorescence) (7) Flow Cytometry (Troubleshooting) (8) Tissue Imaging (Autofluorescence) (9) ELISPOT (8) Immunoprecipitation (Protein Obstruction) (1) Immunoprecipitation (No Protein Detected) (5) Immunoprecipitation (High Background) (8) Immunoprecipitation (High Antibody Elution) (1) Immunohistochemistry (No Staining) (9) Immunohistochemistry (High Background) (9) ChIP (PCR Amplification Problems) (4) ChIP (Low Signal) (8) ChIP (Low Resolution with High Background) (6) ChIP (High Background) (1) Western Blot (Blue Background) (1) Western Blot (Unusual Gel Band Appearance) (3) Western Blot (Unexpected Multiple Bands) (7) Western Blot (Misshapen / Uneven Bands) (5) Western Blot (Bands at Wrong MW) (5) Western Blot (Detection Problems) (7) Western Blot (Weak / No Signal) (6) ELISA (Standard Curve Fit Problems) (6) ELISA (Inconsistent Results / High CV) (6) ELISA (High Background) (8) ELISA (Signal Problems) (11) ELISA (Competitive) (18) Cell-free DNA Extraction (8) Bacterial rRNA Depletion (4) RNA Depletion for RNA-seq (7) LAMP (Loop-mediated Isothermal Amplification) (7) HMW DNA Extraction (Monarch) (7) NGS Library Preparation (NEBNext Ultra II) (7) RNA Cleanup (4) DNA Cleanup & Plasmid Purification (7) PCR (Polymerase Chain Reaction) (26) Restriction Enzyme Digest (13) Western Blot (9) Immunohistochemistry (IHC) (6) Colony Formation Assay (10) Transwell Migration / Invasion Assay (5) qPCR (RT-qPCR) (5) Transfection (8) Plasmid Construction (1) Sanger Sequencing (2) Plasmid Mini-prep (1) Plasmid Construction (Double Digest) (1) Protein Extraction (4) Transfection (Co-transfection) (1) Transfection (siRNA Knockdown) (1) CCK-8 Cell Viability Assay (5) Wound Healing Assay (5)
Flow Cytometry (Fc Blocking) severe

High Background Staining from Non-Specific Fc Binding

Flow cytometry data shows elevated background fluorescence and false-positive signals, particularly in populations with high Fc receptor expression (monocytes, macrophages, dendritic cells, B cells, NK cells). Antibodies bind to cells lacking the target antigen.

💡 4 causes ✓ 5 fixes
Flow Cytometry (Fc Blocking) severe

Species-Mismatched Fc Blocking Reagent Ineffective

Persistent high background staining and false positives despite applying Fc blocking reagent. Staining pattern shows non-specific binding to Fc receptor-expressing cells even after blocking step.

💡 4 causes ✓ 5 fixes
Flow Cytometry (Fc Blocking) moderate

Suboptimal Fc Block Concentration Causes Ineffective Blocking

Inconsistent blocking efficiency with variable background staining across experiments. Either insufficient reduction in non-specific binding or interference with specific antibody-antigen interactions.

💡 4 causes ✓ 5 fixes
Flow Cytometry (Fc Blocking) moderate

Incorrect Fc Blocking Timing and Sequence

Reduced blocking efficacy with higher than expected background despite using Fc blocking reagent. Non-specific staining patterns similar to samples without Fc block.

💡 4 causes ✓ 5 fixes
Flow Cytometry (Fc Blocking) moderate

Inadequate Controls for Fc Blocking Verification

Inability to distinguish whether observed staining is specific or due to incomplete Fc blocking. Uncertainty about blocking efficacy and data interpretation.

💡 4 causes ✓ 5 fixes
Flow Cytometry (Fc Blocking) minor

Fc Blocking Reagent Storage and Stability Problems

Progressive decline in Fc blocking efficacy over time with the same reagent lot. Previously effective blocking protocol shows increasing background in recent experiments.

💡 5 causes ✓ 6 fixes
Flow Cytometry (Fc Blocking) critical

Fc Block Omitted in High Fc Receptor Panels

Severe background noise and false positives specifically in immunology panels analyzing monocytes, macrophages, NK cells, or dendritic cells. Data quality deteriorates compared to other cell types.

💡 4 causes ✓ 5 fixes