Failure Case Library

Real lab failures, root causes, and fixes — curated and bilingually annotated by our team.

All Techniques (8) Nucleic Acid Quantification (9) Lipid Transfection (8) End-point PCR Primers (9) Cell Culture (Contamination) (7) PCR (Sigma Guide) (12) Flow Cytometry (Controls) (8) PCR / qPCR Plastics (9) PCR (Invitrogen Guide) (8) Cell Culture (Precipitates) (6) Cell Culture (Cell Death) (8) ELISA (Sigma Guide) (6) PCR / RT-PCR Amplification Problems (5) Flow Cytometry (Paraformaldehyde Fixation) (14) Flow Cytometry (Sample Considerations) (14) ELISA (R&D Guide) (10) Western Blot Immunodetection (19) Flow Cytometry (CST Guide) (8) Immunohistochemistry (CST Guide) (14) Immunoprecipitation (CST Guide) (14) ChIP (CST Guide) (8) ELISA Development (9) Western Blot (Sigma Protocol) (8) IP-Western Blot (6) Western Blot (CST Guide) (8) Flow Cytometry (Fixation Buffers) (7) Flow Cytometry (Isotype Controls) (7) Flow Cytometry (Fixation & Permeabilization) (9) Flow Cytometry (Fc Blocking) (7) Flow Cytometry (Compensation) (7) Flow Cytometry (Autofluorescence) (7) Flow Cytometry (Troubleshooting) (8) Tissue Imaging (Autofluorescence) (9) ELISPOT (8) Immunoprecipitation (Protein Obstruction) (1) Immunoprecipitation (No Protein Detected) (5) Immunoprecipitation (High Background) (8) Immunoprecipitation (High Antibody Elution) (1) Immunohistochemistry (No Staining) (9) Immunohistochemistry (High Background) (9) ChIP (PCR Amplification Problems) (4) ChIP (Low Signal) (8) ChIP (Low Resolution with High Background) (6) ChIP (High Background) (1) Western Blot (Blue Background) (1) Western Blot (Unusual Gel Band Appearance) (3) Western Blot (Unexpected Multiple Bands) (7) Western Blot (Misshapen / Uneven Bands) (5) Western Blot (Bands at Wrong MW) (5) Western Blot (Detection Problems) (7) Western Blot (Weak / No Signal) (6) ELISA (Standard Curve Fit Problems) (6) ELISA (Inconsistent Results / High CV) (6) ELISA (High Background) (8) ELISA (Signal Problems) (11) ELISA (Competitive) (18) Cell-free DNA Extraction (8) Bacterial rRNA Depletion (4) RNA Depletion for RNA-seq (7) LAMP (Loop-mediated Isothermal Amplification) (7) HMW DNA Extraction (Monarch) (7) NGS Library Preparation (NEBNext Ultra II) (7) RNA Cleanup (4) DNA Cleanup & Plasmid Purification (7) PCR (Polymerase Chain Reaction) (26) Restriction Enzyme Digest (13) Western Blot (9) Immunohistochemistry (IHC) (6) Colony Formation Assay (10) Transwell Migration / Invasion Assay (5) qPCR (RT-qPCR) (5) Transfection (8) Plasmid Construction (1) Sanger Sequencing (2) Plasmid Mini-prep (1) Plasmid Construction (Double Digest) (1) Protein Extraction (4) Transfection (Co-transfection) (1) Transfection (siRNA Knockdown) (1) CCK-8 Cell Viability Assay (5) Wound Healing Assay (5)
Western Blot (CST Guide) moderate

Secreted Proteins Undetectable in Cell Lysate

Target protein cannot be reliably detected in whole cell extract despite confirmed expression. Signal may appear in cell culture media but not in cell lysate.

💡 3 causes ✓ 4 fixes
Western Blot (CST Guide) moderate

Multiple Bands or Non-specific Binding

Western blot shows multiple bands instead of a single expected band. Extra bands may appear at different molecular weights than predicted, or background signal throughout the lane is elevated.

💡 6 causes ✓ 6 fixes
Western Blot (CST Guide) moderate

Dark or Black Blot with Ghost Bands

Entire membrane appears dark or black after chemiluminescent detection, often with white 'ghost' bands where protein bands should appear. Background signal is saturated across the whole blot.

💡 4 causes ✓ 5 fixes
Western Blot (CST Guide) moderate

Low Molecular Weight Protein Signal Loss

Proteins smaller than 25-30 kDa show weak or absent signal despite adequate expression levels. Higher molecular weight proteins from the same sample transfer successfully.

💡 3 causes ✓ 4 fixes
Western Blot (CST Guide) moderate

Tween-20 Concentration Outside Optimal Range

Signal intensity is lower than expected or background is elevated. Changing Tween-20 concentration in wash/incubation buffers significantly affects results.

💡 3 causes ✓ 4 fixes
Western Blot (CST Guide) minor

Speckled or Splotchy Membrane Background

Membrane shows irregular spots, speckles, or splotches distributed across the surface. Background is uneven with localized dark regions rather than uniform signal.

💡 3 causes ✓ 4 fixes
Western Blot (CST Guide) moderate

Protein Band Smearing on Western Blot

Protein bands appear as vertical smears rather than discrete sharp bands. Smearing may occur above or below the expected molecular weight, making band interpretation difficult.

💡 4 causes ✓ 5 fixes
Western Blot (CST Guide) severe

Low or No Signal on Western Blot

Target protein bands are absent or very faint on the blot, even after extended exposure times. Positive control samples may also show weak or no signal.

💡 6 causes ✓ 6 fixes